Rosa francesca de masi glu20.11.2019
All-atom empirical potential for molecular modeling and dynamics studies of proteins. The normalized histograms were generated using the combined data of the four sets of simulations with RNA. Model-Free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. Catch up instantly on the best stories happening as they unfold. Characterization of internal motions: Lipari—Szabo order parameters The generalized order parameters, S 2were calculated to characterize the internal motions of the protein. Copy it to easily share with friends. Francesca De Masi. See all adverts.
Rosa Francesca De Masi of Università degli Studi del Sannio, Benevento (UniSannio) | Read 48 publications | Contact Rosa Francesca De Masi.
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Rosa Francesca De Masi. University of Sannio - DING - Department of Engineering.
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The mutation of a negatively charged residue (Glu) to a positively charged residue (Arg/Lys) has a.
Couples from. Skip all. We observe different contacts in the different trajectories.
The results led to the following conclusions.
Residues directly involved in RNA binding in the NMR structure of TIS11d are indicated with an asterisk: a black asterisk is used for residues which form a hydrogen bond with a base of the RNA sequence and a green asterisk identifies aromatic residues involved in base-stacking interactions with the RNA. Hope you like it!
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Definition of hydrogen bonding Hydrogen bonds are defined by the distance between the donor and the acceptor being less than a cut-off of 4.
This goal is best achieved using a combination of experimental and computational techniques.
The existence of these three bonds with the same nucleotide, but involving residues that are separated by 17 residues in the sequence of the protein highlights the critical role played by RNA in preserving the tertiary alignment of the zinc fingers in the bound state of TIS11d. The single secondary structural element in the linking residues is a 3 10 -helix located near ZF1.
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Hydrogen bonds are formed between distant residues which stabilize the compact structure Fig.